Combinatorial-Chemistry-and-New-Drugs

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CombinatorialChemistryandNewDrugsTofightdisease,theimmunesystemgeneratesproteinsknownasantibodiesthatbindtoinvadingorganisms.Thebodycanmakeaboutatrilliondifferentantibodies,producedbyshufflingandreshufflingtheirconstituentparts.Buttheimmunesystemisnotequippedtocraftaspecializedantibodyeachtimeitisfacedwithanewpathogen.Insteadthebodyselectivelydeploysonlythoseexistingantibodiesthatwillworkmosteffectivelyagainstaparticularfoe.Theimmunesystemdoesthis,ineffect,bymassscreeningofitsantibodyrepertoire,identifyingtheonesthatworkbest.Inaprocesscalledcombinatorialchemistry,wegeneratealargenumberofrelatedcompoundsandscreenthecollectionfortheonesthatcouldhavemedicinalvalue.Thisapproachdiffersfromthemostcommonwaypharmaceuticalmakersdiscovernewdrugs.Theytypicallybeginbylookingforsignsofadesiredactivityinalmostanythingtheycanfind,suchasdiversecollectionsofsyntheticcompoundsorofchemicalsderivedfrombacteria,plantsorothernaturalsources.Oncetheyidentifyapromisingsubstance(knowninthefieldasaleadcompound),theylaboriouslymakemanyone-at-a-timemodificationstothestructure.,testingaftereachsteptodeterminehowthechangesaffectedthecompound`schemicalandbiologicalproperties.Oftentheseproceduresyieldacompoundhavingacceptablepotencyandsafety.Foreverynewdrugthatmakesittomarketinthisway,however,researchersquitelikelytinkeredwithandabandonedthousandsofothercompoundsenroute.Theentireprocedureistime-consumingandexpensive:ittakesmanyyearsandhundredsofmillionsofdollarstomovefromaleadcompoundinthelaboratorytoabottleofmedicineontheshelfofyourlocalpharmacy.Theclassicalapproachhasbeenimprovedbyscreeningteststhatworkmorerapidlyandreliablythaninthepastandbyburgeoningknowledgeabouthowvariousmodificationsarelikelytochangeamolecule`sbiologicalactivity.Butasmedicalsciencehasadvanced,demandfordrugsthatcaninterveneindiseaseprocesshasescalated.Tofindthosedrugs,researchersneedmanymorecompoundstoscreenaswellasawaytofindleadcompoundsthatrequiredlessmodification.Drugmakershavetwobasiccombinatorialtechniquesattheirdisposal.Thefirst,knownasparallelsynthesis,wasinventedinthemid1980sbyH.MarioGeysen,nowatGlaxoWellcome.Heinitiallyusedparallelsynthesisasaquickwaytoidentifywhichsmallsegmentofanygivenlargeproteinboundtoanantibody.Geysengeneratedavarietyofshortproteinfragments,orpeptides,bycombiningmultipleaminoacids(thebuildingblocksofpeptidesandproteins)indifferentpermutations.Byperformingdozensorsometimeshundredsofreactionsatthesametimeandthentestingtoseewhethertheresultingpeptideswouldbindtotheparticularantibodyofinterest,herapidlyfoundtheactivepeptidesfromalargeuniverseofpossiblemolecules.Inaparallelsynthesis,alltheproductsareassembledseparatelyintheirownreactionvessels.Tocarryouttheprocedure,chemistsoftenuseaso-calledmicrotitreplate-----asheetofmoldedplasticthattypicallycontainseightrowsand12columnsoftinywells,eachofwhichholdsafewmillilitersoftheliquidinwhichthereactionswilloccur.Thearrayofrowsandcolumnsenablesworkerstoorganizethebuildingblockstheywanttocombineandprovidesareadymeanstoidentifythecompoundinaparticularwell.Chemistsoftenstartsacombinatorialsynthesisbyattachingthefirstsetofbuildingblockstoinert,microscopicbeadsmadeofpolystyrene(oftenreferredtoassolidsupport.).Aftereachreaction,researcherswashawayanyunreactedmaterial,leavingbehindonlythedesiredproducts,whicharestilltetheredtothebeads.Althoughthechemicalreactionsrequiredtolinkcompoundstothebeadsandlatertodetachthemintroducecomplicationstothesynthesisprocess,theeaseofpurificationcanoverweightheseproblems.Inmanylaboratoriestoday,robotsassistwiththeroutineworkofparallelsynthesis,suchasdeliveringsmallamountsofreactivemoleculesintotheappropriatewells.Inthisway,theprocessbecomesmoreaccurateandlesstedious.Thesecondtechniqueforgeneratingacombinatoriallibrary,knownasasplit-and-mixsynthesis,waspioneeredinthelate1980sbyArpadFurka,nowatAdvancedChemTechinLouisville,Ky.Incontrasttoparallelsynthesis,inwhicheachcompoundremainsinitsowncontainer,asplit-and-mixsynthesisproducesamixtureofrelatedcompoundsinthesamereactionvessel.Thismethodsubstantiallyreducesthenumberofcontainersrequiredandraisesthenumberofcompoundsthatcanbemadeintothemillions.Thetrade-off,however,isthatkeepingtrackofsuchlargenumbersofcompoundsandthentestingthemforbiologicalactivitycanbecomequitecomplicated.Aswementionedearlier,oneoftheproblemswithasplit-and-mixsynthesisisidentifyingthecompositionofareactivecompoundwithalargemixture.KitLamoftheUniversityofArizonahasdevelopedawaytoovercomethisobstacle.Henotedthatattheendofasplit-and-mixsynthesis,allthemoleculesattachedtoasinglebeadareofthesamestructure.Scientistscanpulloutfromthemixturethebeadsthatbearbiologicallyactivemoleculesandthen,usingsensitivedetectiontechniques,determinethemolecularmakeupofthecompoundattached.Unfortunately,thetechniquewillworkonlyforcertaincompounds,suchaspeptidesorsmallsegmentsofDNA.Nevertheless,becauseofdifficultiesofidentifyingcompoundsmadeinasplit-and-mixsynthesis,mostpharmaceuticalcompaniestodaycontinuetorelyonparallelsynthesis.

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