NCBI中各个符号代表的意思

GraphicalViewLegendNCBIUserDocumentVersion18Page1of161FeatureRenderingThissectioncoversfeaturesthatusegenericfeaturerenderingsettings.Thefeatures(SNPs,structuralvariants,cloneplacements,andsegmentalduplications)thatrequirespecialhandlingarecoveredinthelatersections.1.1FeatureColorCodeFeaturetypeColorVisualExamplesGeneGreenRNABlueCodingregionRedAllotherfeaturesBlack1.2SpecialRenderingStylesForfeatureswithspecialattributes,specialrenderingwillbeapplied.1.2.1GenesmarkedaspseudoSettingsVisualEffectVisualExamplesAllfeaturesareshowninonegenegroupStripesovergreengenebarGenebarishiddenGreenstripebackgroundGenebarandgenelabelarehiddenGreenstripebackground1.2.2FeatureswithexceptiontextExceptionExampleVisualEffectVisualExamplesMismatchintranscriptionShadedbackgroundMismatchfortranslationShadedbackgroundUnclassifiedtranscriptiondiscrepancyShadedbackground1.2.3FeaturelocationmarkedaspartialExampleVisualEffectVisualExamplesPartialstartBlack“”or“”at5’endPartialstopBlack“”or“”at3’endGraphicalViewLegendNCBIUserDocumentVersion18Page2of16PartialstartandstopBlack“”and“”atbothends1.2.4FeaturesmarkedaspartialExampleCasesVisualEffectVisualExamplesExampleincludesapartialfeature(markedaswhite“”and“”)andfeatureswithpartialstop(markedasblack“”)White“”and“”atbothends1.3FeatureDecorationsDifferentfeaturedecorationstylesaresolelyforofferingdifferentwaysofvisualization.Theexactsamefeaturecanberenderedusingeachofthefiveexistingstyles.DécorStylesVisualEffectVisualExamplesDefaultSolidbarsforfeatureintervalsorexons,andsolidlinesforintronsArrowsArrowsatbothendsshowingthestrand,andlightenbarsforintronsSquareanchorSquareforfeaturestart,arrowforfeaturestop,dashlinesforintronsCircleanchorCircleforfeaturestart,arrowforfeaturestop,dashlinesforintronsFancyCircleformRNAstartonly,squareforotherfeaturesstartexceptforgeneandCDS,arrowforfeaturestop,lightenbarsformRNAintrons,andcantedlinesforCDSintronsNote:theglyphsrepresentingfeaturestartandstopwillberenderedonlywhentheirsizescanfitintothefirstandlastintervals.GraphicalViewLegendNCBIUserDocumentVersion18Page3of162GeneModelFeaturesAGeneModelisafeaturegroupthatcontainsfourmainfeatures:gene,mRNA,CDSandExon.ThegroupmayalsocontainSNPandotherfeaturesthatareprojectedfrommRNAandCDSproducts.2.1GeneModelRenderingRenderingOptionsVisualExamplesShowallShowalltranscriptsandCDSs,nogenebarMergetranscriptandCDSpairs,nogenebarMergealltranscriptsandCDSs,nogenebarShowonsinglelinewithexonstructureGenebaronlyWithSNPfeaturesprojectedfrommRNAandCDSproductsWithotherfeaturesprojectedfrommRNAandCDSproducts2.2SpecialRenderingforCDSFeaturesWhenzoomedintothesequencelevel,bothannotatedproteinsequenceandtranslatedproteinsequenceareshownforCDSfeatures.GraphicalViewLegendNCBIUserDocumentVersion18Page4of162.3FeatureRulerForaselectedRNAorCDSfeature,afeaturerulerwillbeshowwiththefeature’slocalcoordinate.3ClonePlacementFeatures3.1CloneDisplayDisplayDescriptionUnique,concordant,RealendsMultiple,concordant,RealendsUniquenotSet,Concordant,RealendsUnique,discordant,RealendsMultiple,discordant,RealendsUniquenotset,discordant,RealendsGraphicalViewLegendNCBIUserDocumentVersion18Page5of16Unique,Concordantnotset,RealendsMultiple,Concordantnotset,RealendsUniquenotset,Concordantnotset,RealendsUnique,Concordant,OnevirtualendMultiple,Concordant,OnevirtualendUniquenotset,Concordant,OnevirtualendUnique,Discordant,OnevirtualendMultiple,Discordant,OnevirtualendUniquenotset,Discordant,OnevirtualendUnique,Concordantnotset,OnevirtualendMultiple,Concordantnotset,OnevirtualendUniquenotset,Concordantnotset,OnevirtualendClonewithnoend,nostrandClonewithnoend,plusstrandClonewithnoend,nostrand,multiple,concordantnotsetClonewithnoend,plusstrand,discordant,uniquenotsetGraphicalViewLegendNCBIUserDocumentVersion18Page6of164SNPFeatures4.1ColorCodeVariationTypeColorSingleNucleotidePolymorphismRedDeletion/InsertionPolymorphismBlueHeterozygousVariation,undefinedatnucleotidelevelGoldenShortTandemRepeat(microsatellite)PolymorphismYellowNamedVariation(insertion/deletionpolymorphismofnamedrepetitiveelement)HunterGreenSequenceScannedforVariation,butnoneobservedBlackMixedVariation(clustercontainssubmissionsfrom2ormoreallelicclasses)GreenMNP(multiplenucleotidepolymorphismwithallelesofcommonlength1)Gray4.1.1VisualExamples4.2ShapeCodeASNPcanberepresentedbyeitheraholloworasolidrectangle.AsolidrectanglemeansthatthisparticularSNPhasaweightof1,andahollowrectangleindicatesaweightof2ormore.SNPMapweightinfo(thenumberoftimesaSNPmapstothegenomecontig(1-10))GraphicalViewLegendNCBIUserDocumentVersion18Page7of161hitsgenomeonce(onthesamechromosome),annotatedonNT_contigs2hitsgenometwice,annotatedonNT_contigswithwarning3hitsgenome3-9times,notannotated10hits10+timesongenome,notannotated(takenfromSNPdocumentationat)4.3SNPBinsForClinicalAssociationsColorDescriptionLightGreenNoSNPsinthisbinhaveanallelemarked“ProbablePathogenic”or“Pathogenic”LightPurpleAtleastoneSNPinthisbinhasanallelemarked“ProbablePathogenic”;noneare“Pathogenic”PurpleAtleastoneSNPin