3Dslicer教程

SurgicalPlanningLaboratoryBrighamandWomen’sHospitalBoston,MassachusettsUSAateachingaffiliateofHarvardMedicalSchool3DVISUALIZATIONOFDICOMIMAGESRADIOLOGICALAPPLICATIONSFORSoniaPujol,PhD,HarvardMedicalSchoolSurgicalPlanningLaboratory,BrighamandWomen’sHospitalKittShaffer,MD,PhD,BostonUniversityVice-ChairmanforEducation,BostonUniversitySchoolofMedicineRonKikinis,MD,HarvardMedicalSchoolSurgicalPlanningLaboratory,BrighamandWomen’sHospital3DVisualizationofDICOMimagesforRadiologicalapplicationsFollowingthistutorial,youwillbeabletoloadandvisualizeDICOMvolumeswith3DSlicer,andtointeractin3Dwithstructuralimagesandmodelsoftheanatomy.Slide2©2012-2014SurgicalPlanningLaboratory,ARROverviewPartI:Introductiontothe3DSlicersoftwarePartII:3DDataLoadingandvisualizationofDICOM-VolumeRenderingofthoraco-abdominalCTdata-SurfaceRenderingofMRheaddataimagesPartIII:3Dinteractiveexplorationoftheanatomy-ExplorationoftheSegmentsoftheliver-ExplorationoftheSegmentsofthelungSlide3©2012-2014SurgicalPlanningLaboratory,ARRThe  tutorial  data  include  4  datasets:    3D  Visualiza6on  DICOM  images  part  1:  • dataset1_Thorax_Abdomen  • dataset2_Head  3D  Visualiza6on  DICOM  images  part  2  • dataset3_Liver  • dataset4_Chest  TutorialDatasetsSlide3©2012-2014SurgicalPlanningLaboratory,ARROverviewPartI:Introductiontothe3DSlicersoftwarePartII:3DDataLoadingandvisualizationofDICOM-VolumeRenderingofthoraco-abdominalCTdata-SurfaceRenderingofMRheaddataimagesPartIII:3Dinteractiveexplorationoftheanatomy-ExplorationoftheSegmentsoftheliver-ExplorationoftheSegmentsofthelungSlide4©2012-2014SurgicalPlanningLaboratory,ARRIntroductiontothe3DSlicersoftwareSlide5©2012-2014SurgicalPlanningLaboratory,ARR  3DSlicer3DSlicerisafreelyavailableopen-sourceplatformforsegmentation,registrationand3Dvisualizationofmedicalimagingdata.Slide6©2012-2014SurgicalPlanningLaboratory,ARR3DSlicerisamulti-institutionaleffortsupportedbytheNationalInstituteofHealth.3DSlicer• 3DSlicerversion4.3isamulti-platformsoftwarerunningonWindows,Linux,andMacOSX• SlicerisdistributedunderaBSDlicensewithnorestrictiononuseSlicerisatoolforresearch,andisnotFDAapproved• DisclaimerItistheresponsibilityoftheuserof3DSlicertocomplywithboththetermsofthelicenseandwiththeapplicablelaws,regulationsandrules.Slide7©2012-2014SurgicalPlanningLaboratory,ARRAninterdisciplinaryplatformAnopen-sourceenvironmentforsoftwaredevelopersAnend-userapplicationforclinicalinvestigatorsandscientistsAsoftwareplatformthatisbotheasytouseforclinicalresearchersandeasytoextendforprogrammers©2012-2014SurgicalPlanningLaboratory,ARRSlide83DSlicerHistory• 1997:SlicerstartedasaresearchprojectbetweentheSurgicalPlanningLab(Harvard)(MIT)andtheCSAILImageCourtesyoftheCSAIL,MITSlide9©2012-2014SurgicalPlanningLaboratory,ARR3DSlicerHistory• 1997:SlicerstartedasaresearchprojectbetweentheSurgicalPlanningLab(Harvard)andtheCSAIL(MIT)2014:Multi-institutionefforttosharethelatestadvancesinimageanalysiswiththeclinicalandscientificcommunitySlide10• ©2012-2014SurgicalPlanningLaboratory,ARRAmulti-institution:NA-MIC,NAC,NCIGTSlide11©2012-2014SurgicalPlanningLaboratory,ARRPI:RonKikinis,M.D.PIs:FerencJolesz,M.D.,ClareTempany,M.D.Slicer:BehindthescenesSlide12©2012-2014SurgicalPlanningLaboratory,ARR  SlicerisbuilteverynightonWindows,MacandLinuxplatformsSlicerTrainingevents• Hands-ontrainingworkshopsatnationalandinternationalvenuesMorethan2,700clinicians,clinicalresearchersandscientiststrainedsince2005• Slide13©2012-2014SurgicalPlanningLaboratory,ARRSlicerTrainingeventsMajor– internationalconferencesRSNA2008,2009,2010,2011,2012,2013,2014MICCAI2008,2009,2011,2012,2013,2014SfN2009,2011SPIE2012,2013,2014CAOS2010CARS2010,2012,2013– – – – – RSNA2011©2012-2014SurgicalPlanningLaboratory,ARRSlide14RSNAActivitiesHands-onrefreshercourses• • 3DVisualizationofDICOMimagesforRadiologyApplicationsQuantitativeImagingforClinicalResearchandPracticeQuantitativeImagingReadingRoomExhibit• 3DSlicer:AnOpenSourcePlatformforSegmentation,Registration,QuantitativeImaging,and3DVisualizationMulti-ModalImageData.ofSlide15©2012-2014SurgicalPlanningLaboratory,ARROverviewPartI:Introductiontothe3DSlicersoftwarePartII:3DDataLoadingandvisualizationofDICOM-VolumeRenderingofthoraco-abdominalCTdata-SurfaceRenderingofMRheaddataimagesPartIII:3Dinteractiveexplorationoftheanatomy-ExplorationoftheSegmentsoftheliver-ExplorationoftheSegmentsofthelungSlide16©2012-2014SurgicalPlanningLaboratory,ARRWelcometoSlicer4Slide17©2012-2014SurgicalPlanningLaboratory,ARRTheWelcomemoduleisthedefaultstart-upmoduleNavigatingtheApplicationGUISlide18©2012-2014SurgicalPlanningLaboratory,ARRWelcometoSlicer4.3.1.1Slide19©2012-2014SurgicalPlanningLaboratory,ARR  ClickonWelcometoSlicertodisplaythelistofmodulesofSlicerintheModulesmenuWelcometoSlicer4Slide20©2012-2014SurgicalPlanningLaboratory,ARR  Slicer4.3.1containsmorethan100modulesforimagesegmentation,registrationand3DvisualizationofmedicalimagingdataPart1:LoadingaDICOMVolumeSlide21©2012-2014SurgicalPlanningLaboratory,ARRLoadingaDICOMvolumeSlide22©2012-2014SurgicalPlanningLaboratory,