高通量测序技术应用于污水处理厂细菌气溶胶群落结构分析许光素

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3811201811ActaScientiaeCircumstantiaeVol.38No.11Nov.2018No.201509008SupportedbythePublicWelfareProgramofMinistryofEnvironmentalProtectionofChinaNo.2015090081987—E-mailxgs45622136@163.com*E-mailjxliu@rcees.ac.cnBiographyXUGuangsu1987—femaleE-mailxgs45622136@163.com*CorrespondingauthorE-mailjxliu@rcees.ac.cnDOI10.13671/j.hjkxxb.2018.0208.2018.J.38114235-4242XuGSLiuJXHanYPetal.2018.Applicationofhigh-throughputsequencingtechnologytoanalyzethecommunitystructureofbacterialaerosolsinwastewatertreatmentplantsJ.ActaScientiaeCircumstantiae38114235-42421212*1121.1000852.1000492018-04-112018-05-082018-05-08.“+”“Andersen+”.、、、..16SrDNA0253-2468201811-4235-08X172X5AApplicationofhigh-throughputsequencingtechnologytoanalyzethecommunitystructureofbacterialaerosolsinwastewatertreatmentplantsXUGuangsu12LIUJunxin12*HANYunping1LILin121.ResearchCenterforEco-EnvironmentalSciencesChineseAcademyofSciencesBeijing1000852.UniversityofChineseAcademyofSciencesBeijing100049Received11April2018receivedinrevisedform8May2018accepted8May2018AbstractBacterialaerosolsinwastewatertreatmentplantsWWTPshaveaquitecomplexcommunitystructureduetotheiremissionfromwastewaterandtreatmentfacilities.Thereforeitisofgreatsignificancetoselectappropriatesamplingandanalysismethodsfortheirdiversityidentificationandriskassessment.InthisstudyparticulatemattercollectorwasselectedasthecollectionforbacterialaerosolsthroughthewholeprocessofaWWTPandhigh-throughputsequencingformicrobialanalysisrespectivelyandsimultaneouslyAndersensix-stageimpactorandcloninglibrarywereusedasacontrol.Resultsshowthattheformercombinationwasnotonlysignificantlybetterintermsofanalyzingthespeciesdiversityoverallcommunitycompositionanddominantcommunitystructureofbacterialaerosolsineachsamplingpointbutalsomoreconvenientandfastertoobtainmorecomprehensivedataclosetotherealdistributionsinbacterialaerosols.TheresultsofthisstudyprovideascientificbasisfortheselectionofappropriatecollectionandanalysismethodsforbacterialaerosolsinWWTPs.Keywords16SrDNAclonelibraryhigh-throughputsequencingwastewatertreatmentplantbacterialaerosol1IntroductionDesprésetal.201220152005..0.5~100μmBacillus、Pseudomonas、Sphingomonas、Staphylococcus2002.382013Hanetal.2013Brandietal.2000Lietal.2013...、、、20022003.Andersen、、Xuetal.2013.、Caoetal.2014.10%Dongetal.2016Urbanoetal.2011.2016.16SrDNAUrbanoetal.2011Hanetal.2012、-Polymerasechainreaction-denaturedgradientgelelectrophoresisPCR-DGGEXuetal.2013、Pecciaetal.20062016、TerminalrestrictionfragmentlengthpolymorphismT-RFLP2016、FluorescenceinsituhybridizationFISHLangeetal.1997、PCRWeryetal.2008Yamamotoetal.2014Caoetal.2014Yamamotoetal.2014Dannemilleretal.2014、、.、Caoetal.2014Kumaraswamyetal.2014...、Andersen.2Materialsandmethods2.1SBR5.0×104m3·d-1.、、、SBR.200m200m.1.5m.2.2TH-150C90mmPALLNYU.S.99.9%100L·min-14h..-80℃.AndersenAndersen228-9530KSKCGulfCoastInc.USA40090mm02-27528.3L·min-13min3.2.32.3.1DNADNA63241140mL1×PBS4℃200g2h.PESMO-BIOPowerSoilDNACarlsbadCAU.S.PowerBeadTubeDNAJiangetal.2015.DNAAndersen30℃48h1×PBSTanBeadDNA.2.3.2DNAV3+V4338F/806R5'-ACTCCTACGGGAGGCAGCA-3'/5'GGACTACHVGGGTWTCTAAT-3PCR95℃3min95℃30s55℃30s72℃45s2772℃10min10℃.2.0%AxyPrepDNAAXYGENPCR.DNAIlluminaMiseq97%OTUoperationaltaxonomicunitsOTU.OTURibosomalDatabaseProjectRDPClassifier97%OTUphylum、class、order、family、genus.2.3.3DNAPCR、Hanetal.2013C1C≥75%C.C=1-n1N()×100%1N16SrDNAn116SrDNA.Shannon-Wiener2H'=∑si=1PilnPi2PiiOTU≥97%OTUOTUSOTU.3Resultsandanalysis3.11.116SrDNAabFig.1Sequencinginformationofairbornebacteriaanalyzedby16SrDNAclonelibraryaandhigh-throughputsequencingb73243843~107OTUs11~3723656~42383OTUs1212~1638.、“+”“Andersen+”.2.77.50%~90.40%99%..216SrDNAFig.2Coverageofairbornebacteriacommunitystructuresequencedby16SrDNAclonelibraryandhigh-throughputsequencing3.2Shannon-Wiener0.58~2.375.06~5.99..316SrDNAShannon-WienerFig.3Shannon-Wienerindexforairbornebacteriaanalyzedby16SrDNAclonelibraryandhigh-throughputsequencing3.2、、、51.1Table1Taxoncomparisonofclonelibraryandhigh-throughputsequencing3711143234621122484224“+”“Andersen+”.Firmicutes、ProteobacteriaActinobacteria34a90.0%、92.2%78.9%62.1%74.4%.341≥1%11100%3.Bacteroidetes3.06%~13.48%83241172.1%~91.7%4b.416SrDNAabFig.4Communitystructureofairbornebacteriaonphylumlevelanalyzedby16SrDNAclonelibraryaandhigh-throughputsequencingtechnologyb2018、Chloroflexi、Acidobacteria4b.DNA、.5311%Bacillus87.0%74.8%6.90%15.0%Aeromonas55.2%.516SrDNAFig.5Communitystructureofairbornebacteriaanalyzedby16SrDNAclonelibraryatgenuslevel932438、7m.4221≥1%791%Others6.683.3%~98.5%.6Fig.6Communitystructureofairbornebacteriaanalyzedbyhighthroughoutsequencingatgenuslevel“+”“Andersen+”04241110.7%、12.5%Peptostreptococcaceae_unclassified15.1%、11.1%、Parkeretal.2011、Luetal.2015Jiangetal.2015Brandietal.2000Lietal.20137.1%ZoogloeaZoogloea.DNA、、、、Behzadetal.2015.、16SrDNA1500bp.4ConclusionsAndersen83.3%~98.5%、“+”、、..ReferencesBehzadHGojoboriTMinetaK.2015.ChallengesandopportunitiesofairbornemetagenomicsJ.GenomeBiologyandEvolution751216-1226BrandiGSistiMAmaglianiG.2000.Evaluationoftheenvironmentalimpactofmicrobialaerosolsgenerat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